PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00654.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 195aa    MW: 22835 Da    PI: 6.0444
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00654.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM24.19.7e-08610032128
                      NAM  32 evikevdiykv.ePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksg.yWkatgkdkevlskkgelvglkktLvfy 109
                              + i+ vd+y   +P++L +      + +++++  yfF+k +kk  +gk+ nr++  g  Wk            g+++glkkt+ f 
  Sme2.5_00654.1_g00001.1   6 DDIPYVDLYGNkKPSELFQellcseEKTNNDHVNYFFTKLKKKFVKGKNINRSIVGGdKWK------------GSVIGLKKTFRFD 79 
                              5588899986548***964466553222234455******************766441466............4579********9 PP

                      NAM 110 ...kgrapkgektdWvmheyrl 128
                                 +gr+ + +   W+m+ey l
  Sme2.5_00654.1_g00001.1  80 eerSGRD-NEKIMYWIMKEYYL 100
                              4322333.336789******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.0441127IPR003441NAC domain
SuperFamilySSF1019414.45E-126127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MHIEFDDIPY VDLYGNKKPS ELFQELLCSE EKTNNDHVNY FFTKLKKKFV KGKNINRSIV  60
GGDKWKGSVI GLKKTFRFDE ERSGRDNEKI MYWIMKEYYL DEDTMKVLRD SGEIRHEDYV  120
VCSIVKKVSL CKNSQDSPTK IDNIASDCHC GPDKKLIYAA EIWLLPTLNE SFKPLTDEDV  180
AIFDKPDPEY PHTYK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237307.13e-76PREDICTED: uncharacterized protein LOC101265124
TrEMBLK4BR203e-76K4BR20_SOLLC; Uncharacterized protein
STRINGSolyc04g025760.1.11e-75(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041